RESTful Interface

Parameters

  • IMGT/DB
  • Glstring
  • ARS Type
  • MAC Url
  • Expand Genotypes
  • Expand Genomic Typing

Convert HLA Typing

curl --header "Content-type: application/json" --request POST
        --data '{"arsFile":"hla_nom_g.txt","dbversion":"3.20.0","arsType":"G",
        "Subjects":[{"SubjectID":1,"typing":["A*01:01+A*01:02","B*08:01+B*07:02","C*07:01+C*07:01"]},
        {"SubjectID":1,"typing":["A*01:01+A*01:02","B*08:01+B*07:02","C*07:01+C*07:01"]}]}'
        http://localhost:3000/api/v1/reduxSubjects

Convert Subject Typing

curl --header "Content-type: application/json" --request POST
        --data '{"arsFile":"hla_nom_g.txt","dbversion":"3.20.0","arsType":"G",
        "Subjects":[{"SubjectID":1,"typing":["A*01:01+A*01:02","B*08:01+B*07:02","C*07:01+C*07:01"]},
        {"SubjectID":1,"typing":["A*01:01+A*01:02","B*08:01+B*07:02","C*07:01+C*07:01"]}]}'
        http://localhost:3000/api/v1/reduxSubjects

Get ARS Data

./nextflow run nmdp-bioinformatics/flow-blast-hml -with-docker \
        nmdpbioinformatics/docker-blast-hml \
        --hml test_file.hml --outdir /path/to/output/dir